Humidifiers should not be blowing directly into a tortoise enclosure. Its not good for them to be breathing those micro-droplets, and that is not the same thing as humidity.Pyramiding is primally caused by low humidity where the shell is consistently too dry. The proper humidity is species dependent. Keep in mind that humans prefer much lower humidity than tortoises. For indoor enclosures balancing the proper humidity for tortoise and human habitats becomes and engineering challenge.
In nature, many tortoises expose themselves to high humidity by burrowing into moist substrates that are wet to the touch. A sulcata tortoise will borrow a tunnel that is many feet deep. They will alternate this by basking in the sun where fungus growth will be stopped. In North America, think of the Eastern Box Turtle that burrows into wet leaves during warm or hot days.
The challenge in cooler North American climates is keeping proper humidity for warm climate species during cold months. The heat needed to keep the animal warm also causes low humidity. This is the opposite thermodynamic effect of a typical tortoise burrow where outside warm humid air will increase in humidity as it cools entering the burrow.
So what to do when keeping the tortoise indoors? Setup a controlled environment with the proper heat and humidity. Heat can use lamps, heat mats, air heaters, building heat, or whatever is available and properly protected from burning the animal. Setup a temperature gradient during day lighting hours with a warm basking spot and a cooler hiding space. Humidity can be maintained with moist substrate, water containers large enough for bathing, and humidifiers. Small enclosures can use reptile humidifiers. Larger enclosures can consider household humidifiers. Still the most effective method is likely moist substrate of some type of combination of clean soil, clean leaves, hay, and straw. All the water will need constant replenishing as the heat dries it.
Other factors that contribute to pyramiding are diet and lighting, because these impact bone growth. The most common cause is low humidity. The enclosure in the photo is setup to be very dry.
Also, soil, leaves, hay and straw should never be used with tortoises, because in the proper damp humid environment, they will mold and will likely be eaten.
The solution is, quite simply, a closed chamber that will contain the warm moist air that is generated. The cold temps of winter have little effect in a closed chamber because the warm humid air is properly contained.
Give this a read through to catch yourself up to speed:
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The above info is for people new to the forum, not necessarily new to tortoise care. Your questions are welcome. Feel free to counter and ask questions. All of these assertions can be backed up with facts and extensive first hand experience.